SPORTS1.0 is a pipeline to anotate and quantify small RNAs from RNA-seq data, which is optimized for rRNA- and tRNA-derived small RNAs. In addition, SPORTS1.0 can predict potential RNA modification sites using nucleotide mismatch information. SPORTS1.0 is precompiled to annotate small RNAs for a wide range of species across bacteria, fungi, plants, and animals.
Citation: Shi J., Ko E.A., Sanders K.M., Chen Q., and Zhou T., SPORTS1.0: a tool for annotating and profiling non-coding RNAs optimized for rRNA- and tRNA- derived small RNAs. Genomics, Proteomics & Bioinformatics, in press.